Our Team

Image
thumbnail kapanidis 1

Achillefs N. Kapanidis

Professor of Biological Physics

kapanidis@physics.ox.ac.uk

Short CV
Image
hafez

Hafez El Sayyed

Post-doctoral Fellow

hafez.elsayyed@physics.ox.ac.uk

Investigating transcription dynamics and nucleoid structure using super-resolution imaging of RNA polymerase in live E. coli
Image
oli

Oliver Pambos

Post-doctoral Fellow

oliver.pambos@physics.ox.ac.uk

Single molecule and super-resolution studies of the spatial organization of transcription
Image
stelios profile picture 1

Stelios Chatzimichail

Post-doctoral Fellow

stelios.chatzimichail@physics.ox.ac.uk

Single-molecule studies of single-cell bacterial isolates for rapid testing of antimicrobial resistance
Image
jagadish 0 1

Jagadish Prasad Hazra

Post-doctoral Fellow

jagadish.hazra@physics.ox.ac.uk

Single molecule DNA sequencing by hybridisation
Image
dash 1

Suchintak Dash

Post-doctoral Fellow

suchintak.dash@physics.ox.ac.uk

Single molecule analysis of transcription kinetics inside live bacteria
Image
mirjamkummerlin 1

Mirjam Kummerlin

Post-doctoral Fellow

mirjam.kummerlin@physics.ox.ac.uk

Studying transcriptional mechanisms using single-molecule DNA hybridization
Image
maryam 1

Maryam Beigzadeh

Post-doctoral Fellow

maryam.beigzadeh@physics.ox.ac.uk

My primary focus has been on applying AI and machine learning in medicine (particularly image/signal processing) and on mathematical/computational modeling of biological systems. Currently, I am working on AI applications in single-molecule microscopy.
Image
afroze 1

Afroze Chimthanawala

Post-doctoral Fellow

afroze.chimthanawala@physics.ox.ac.uk

nvestigating how components of the transcriptional machinery adjust to environmental changes, ensuring cells maintain optimal gene expression and function
Image
mugshot 2

Sharika Mohanan

Post-doctoral Fellow

sharika.mohanan@physics.ox.ac.uk

Developing optical methods for single molecule imaging in living cells
Image
whatsapp image 2026 02 02 at 2 20 55 pm

Cornelius Lee

DPhil student

cornelius.lee@physics.ox.ac.uk

Applying single-molecule techniques to virology. Investigating the dynamics of influenza replication
Image
jacob 1

Jacob Wright

DPhil student

jacob.wright@linacre.ox.ac.uk

Using super-resolution microscopy to investigate protein structure in bacteria
Image
sammi resize

Sammi Ta

DPhil student

sammi.ta@keble.ox.ac.uk

Molecular mechanisms of bacteriophage infection and replication in E. coli
.image-grid { display: grid; grid-template-columns: repeat(4, 1fr); grid-gap: 3%; margin-bottom: 20%; } .grid-item { position: relative; } .grid-item img { width: 100%; height: auto; display: block; object-fit: cover; } .description { position: absolute; top: 0; left: 0; right: 0; bottom: 0; background-color: rgba(255, 255, 255, 0.8); display: flex; align-items: center; justify-content: center; opacity: 0; transition: opacity 0.3s; line-height: 1.5; width: 100%; /* Removed pointer-events: none; */ } .description a { pointer-events: auto; /* Link is clickable */ color: blue; text-decoration: underline; padding: 10px; background: rgba(255, 255, 255, 0.9); z-index: 2; /* Ensure link is above overlay */ } .grid-item:hover .description { opacity: 1; } .caption { width: 100%; font-size: 1rem; text-align: left; font-weight: bold; } .name { font-size: 1rem; font-weight: bold; color: green; } .name, .caption, .grid-item > p { position: relative; /* Ensure text stays above overlay when not hovering */ z-index: 1; /* Higher than .description (but lower than link) */ } .p { width: 100%; font-size: 1rem; } /* Media Queries for Responsive Design */ @media (max-width: 600px) { .image-grid { grid-template-columns: repeat(1, 1fr); /* 1 column on small screens */ grid-gap: 10px; } .caption, .name, .p { font-size: 0.8rem; /* Adjust font size for smaller screens */ } } @media (min-width: 601px) and (max-width: 900px) { .image-grid { grid-template-columns: repeat(2, 1fr); /* 2 columns on medium screens */ grid-gap: 7%; } .caption, .name, .p { font-size: 0.9rem; /* Adjust font size for medium screens */ } } @media (min-width: 901px) and (max-width: 1200px) { .image-grid { grid-template-columns: repeat(3, 1fr); /* 3 columns on large screens */ grid-gap: 5%; } .caption, .name, .p { font-size: 1rem; /* Adjust font size for large screens */ } } @media (min-width: 1201px) { .image-grid { grid-template-columns: repeat(4, 1fr); /* 4 columns on extra-large screens */ grid-gap: 3%; /* Keep the original gap for extra-large screens */ } .caption, .name, .p { font-size: 1rem; /* Keep the original font size for extra-large screens */ } } .past-member-entry { display: list-item; list-style-type: disc; list-style-position: outside; /* Ensures bullet stays outside the content */ margin-left: 1em; /* Creates indentation for the bullet */ margin-bottom: 1em; /* Replaces the vspace div */ line-height: 1.4; } /* Remove the vspace div since we're handling spacing with margin-bottom */ .past-member-entry .vspace { display: none; }

 

Past Members

Academic visitors

Nigel D. F. Grindley
Professor of Molecular Biophysics and Biochemistry, Yale UniversityCatherine M. Joyce
Senior Research Scientist, Yale UniversityRichard Ludescher (2018-2019)
Professor of Food Science, Rutgers UniversityXiaojuan Li (2019-2020)
Professor of Biological Sciences and Biotechnology, Beijing Forestry University

Post-doctoral fellows

Dr. Piers Turner (2021-2024).

Dr. Christof Hepp (2018-2023)

Dr. Heesoo Uhm (2019-2023)
research fellow at Seoul National University.

Dr. Abhishek Mazumder

Dr. Prabir Kulabhusan (2021-2022)

Dr. Barak Gilboa (2016-2020)

Dr. Jun Fan (2016-2020)

Dr. Horst Steue (2015-2018)

Dr. Nicole Robb (2011-2017)
a research fellow at the University of Oxford

Dr. Anssi Malinen (2016)
esearch fellow at the University of Turku, Finland

Dr. David Dulin (2016)
avid has set up his own group in Erlangen, Germany.

Dr. David LV Bauer (2016)
post-doctoral researcher in the Sir William Dunn School of Pathology, University of Oxford

Dr. Timothy Craggs (2015)
Tim has set up his own group at the University of Sheffield.

Dr. Geraint Evans (2015)
Geraint is now pursuing a career in industry at Illumina, Inc..

Dr. Pawel Zawadzki (2014)
Currently a postdoctoral fellow in Oxford Biochemistry in Sherratt group.

Dr. Javier Periz (2014)
Pursuing a career in veterinary-related molecular bioscience.

Dr. Louise Aigrain (2010-2013)
Currently a Staff Scientist in the Sequencing Research Team at the Wellcome Trust Research Institute.

Dr. Robert Crawford (2011-2013)
Currently a Scientist in Systems Integration at Illumina, based in Cambridge.

Dr. Johannes Hohlbein (2008-2012)
Currently setting up his own group at Wageningen University, Netherlands.

Dr. Ludovic Le Reste (2011-2012)
Ludo is now pursuing a career in industry in Switzerland.

Dr. Thorben Cordes (2010-2011)
Currently setting up his own group at Zernike Institute for Advanced Materials, University of Groningen, Netherlands.

Dr. Ling Chin Hwang (2006-2009)
Now a post-doctoral researcher at NIH, Washington DC.

Dr. Konstantinos Lymperopoulos (2005-2008)
Now a post-doctoral researcher at BioQuant, University of Heidelberg.

Dr.Mike Heilemann (2005-2007)
Currently a professor at the University of Frankfurt, Germany.

Dr. Soeren Doose (2005)
Currently a group leader at the University of Bielefeld, Germany.

D.Phil students

Dr.Rasched Haidari

Dr.Nicolas Shiaelis

Dr. Alison Farrar
continue her study at Harvard University.

Dr. Anna Wang

Dr. Aleksander Zagajewski

Dr. Andrew McMahon

Dr. Rebecca Andrews

Dr. Maabur Sow
Currently working as a post-doctoral position at Institute for Quantum Optics at Ulm University, Ulm, Germany

Dr. Federico Garza de Leon

Dr. Marko Sustarsic

Dr. Anne Plochowietz

Dr. Diego Duchi Llumigusin

Dr. Alexandra Tomescu
Working for Oxford University Press as an Assistant Editor for scientific publications

Dr. Stephan Uphoff
Currently a Sir Henry Welcome Postdoctoral Fellow ased in Oxford Biochemistry with Sherratt group and Johan Paulsson's lab at Harvard Medical School.

Dr. Justin Pinkney
Currently working for Sargentia, an R&D consultancy based in Cambridge.

Dr. Kristofer Gryte
Now a Data Scientist and Data Visualization Engineer for Decoded

Dr. Seamus Holden
Currently working as a post-doctoral position at Laboratory of Experimental Biophysics at the EPFL, Lausanne, Switzerland.

Dr. Yusdi Santoso
Currently working as a management consultant at The Boston Consulting Group in Indonesia.

Dr. Joseph Torella
Currently pursuing his second doctorate at Harvard University, Boston.

Dr. Peter May
Currently working for a financial institution in London MRes students

Edward Wheeler (2024), Jingwen Xiao(2020)

MPhys students

Qingyang Zheng (2025), Beichen Zhang(2024), Sadia Rahman(2023), Luke Knight(2023), Benjamin Middleton (2022),  Helena Bayley (2022), Joseph Pollacco (2021), Akshat Shah (2021), Kieran Wachsmuth (2020), Nicolas Shiaelis (2019), Joseph Dolphin (2018) Amy Kent (2018), Joe Dolphin (2018), Jonathan Taylor (2017), Mantas Krisciunas (2017), Fraser Jenkings (2016), Thomas Jollans (2015), Andrew Cuthbert (2012), Sam Hollick (2012), Michael Senior (2011), James Dunbar (2010), James Mountain (2010), Doug Kelly (2009), Rob MacAndrew (2009), Nick Berry, Tom Chapman (2008), Robert Edgington (2007), Timan Gill, Mariko Takahagi, and Jonathan Ions (2006)

Biochemistry Part II students

Pouya Shoolizadeh (2011), James Ghadiali (2005);

DTC rotation students

Jack Miller (2012), Mathew Stracy (2012), Sam Roots (2011), Brian Chuang, Tiago Rito (2009), Richard Muscat (2007), Wei Meng Ho, Mark Chang (2006)

Wellcome Trust Centre for Structural Biology rotation Students

David Yadin(2009)

Visiting students

Svea Wilken (2025), Ryan Harrison (2012), Thijs Cui (2014), Martin Kaller (2015), Angelina Scheck (2016)

Summer students

Anna Wang (2018), Irénée Frenot (2010), Oliver Britton (2009), Quentin Delacour (2009); Arnaud Riegert (2008); Vuong Thi Kim Thanh, Ouardane Jouannot (2007), Leila Sattary (2006)

UNIQ+ students

Zonerah Mahmood (2019)